Haoxi Chai, Harianto Tjong, Peng Li, Wei Liao, Ping Wang, Chee Hong Wong, Chew Yee Ngan, Warren J Leonard, Chia-Lin Wei, Yijun Ruan. ChIATAC is an efficient strategy for multi-omics mapping of 3D epigenomes from low-cell inputs. Nat. Comm. 2023 14(1):213.

Yanfen Zhu, Liang Gong, Chia-Lin Wei. Guilt by association: EcDNA as a mobile transactivator in cancer. Trends Cancer 2022 Sep;8(9):747-758 doi: 10.1016/j.trecan.2022.04.011.

Yanfen Zhu, Amit D. Gujar, Chee-Hong Wong, Harianto Tjong, Chew Yee Ngan, Liang Gong, Yi-An Chen, Hoon Kim, Jihe Liu, Meihong Li, Adam Mil-Homens, Rahul Maurya, Chris Kuhlberg, Fanyue Sun, Eunhee Yi, Ana C. deCarvalho, Yijun Ruan, Roel G.W. Verhaak and Chia-Lin Wei. Oncogenic extrachromosomal DNA functions as mobile enhancers to globally amplify chromosomal transcription. Cancer Cell (2021) 39(5):694 May 10, doi: 10.1016/j.ccell.2021.03.006.

Chee Hong Wong, Chew Yee Ngan, Rachel L Goldfeder, Jennifer Idol, Chris Kuhlberg, Rahul Maurya, Kevin Kelly, Gregory Omerza, Nicholas Renzette, Francine De Abreu, Lei Li, Frederick A Browne, Edison T Liu, Chia-Lin Wei. Reduced subgenomic RNA expression is a molecular indicator of asymptomatic SARS-CoV-2 infection. Commun Med 1, 33 (2021). doi: 10.1038/s43856-021-00034-y.

Ngan CY, Wong CH, Tjong H, Wang W, Goldfeder R, Choi C, He H, Gong L, Lin J, Urban B, Chow J, Li M, Lim J, VPhilip V, Murray SA, Wang H, Wei CL. Chromatin interaction analyses elucidate the roles of PRC2-bound silencers in mouse development. Nat Genet. 2020 Mar;52(3):264-272.

Byoungkoo Lee, Jiahui Wang, Liuyang Cai, Minji Kim, Sandeep Namburi, Harianto Tjong, Yuliang Feng, Ping Wang, Zhonghui Tang, Ahmed Abbas, Chia-Lin Wei, Yijun Ruan, Sheng Li. ChIA-PIPE: A fully automated pipeline for comprehensive ChIA-PET data analysis and visualization. Sci. Adv. 2020 Jul 10;6(28): eaay2078.

Bertolini JA, Favaro R, Zhu Y, Pagin M, Ngan CY, Wong CH, Tjong H, Vermunt MW, Martynoga B, Barone C, Mariani J, Cardozo MJ, Tabanera N, Zambelli F, Mercurio S, Ottolenghi S, Robson P, Creyghton MP, Bovolenta P, Pavesi G, Guillemot F, Nicolis SK, Wei CL. Mapping the Global Chromatin Connectivity Network for Sox2 Function in Neural Stem Cell Maintenance. Cell Stem Cell. 2019. 24(3):462

Meizhen Zheng, Simon Zhongyuan Tian, Daniel Capurso, Minji Kim, Rahul Maurya, Byoungkoo Lee, Emaly Piecuch, Liang Gong, Jacqueline Jufen Zhu, Chee Hong Wong, Chew Yee Ngan, Ping Wang, Xiaoan Ruan, Chia-Lin Wei, Yijun Ruan. Multiplex Chromatin Interaction Analysis by Droplet Sequencing with Single Molecule Precision. Nature. 2019 Feb;566(7745):558-562.

Liang Gong, Chee-Hong Wong, Wei-Chung Cheng, Harianto Tjong, Francesca Menghi, Chew Yee Ngan, Edison T. Liu, Chia-Lin Wei (2018). Picky Comprehensively Detects High-Resolution Structural Variants in Nanopore Long Reads. Nature Methods 15 (6), 455-460. doi: 10.1038/s41592-018-0002-6

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